Movie S3.

FS-AFM imaging revealing several oligomers of the wild-type M/R complex relocating the dsDNA substrate via association with Rad50 coiled coil apices. The first oligomer of the Mre11/Rad50 complex arrives (09:00) soon after the protein sample is flowed through the fluid cell (08:00-08:30) and pulls one end of the DNA template to the left. This first oligomer seems to bind the double-helix firmly, apparently via the globular nucleotide binding sites, as the protein-DNA connection at this location remains stable throughout. The next two Mre11/Rad50 assemblies arrive in the observation frame and relocate the same DNA section from left to the right (10:30). (11:30) Over the course of the remaining observation time, the Mre11-Rad50 complexes stay in constant contact with the open DNA-ends while moving them in various directions. These substantial movements appear to result from the interactions with the Rad50 coiled-coil apices. See Supplementary Fig 2 for further explanations. The reactions were performed at room temperature in buffer over the course of 43:30 min. The timescale is min : sec and the z scale is 1.5 nm (dark to light). Movie speed = 2 frames per second.

Modes of action of the archaeal Mre11/Rad50 DNA-repair complex revealed by fast-scan atomic force microscopy

Ekaterina Zabolotnaya, Ioanna Mela, Mark J. Williamson, Sian M. Bray, Siu Kei Yau, Dimitra Papatziamou, J. Michael Edwardson, Nicholas P. Robinson, and Robert M. Henderson

PNAS. 2020. 117:14936-14947 DOI: 10.1073/pnas.1915598117